If they invoice to the company that is not paying the players should this not be dealt with by the Adminstrator?
Yes, but an invoice being 'dealt with' by the Administrator means it goes into the pile of invoices that will almost certainly end up being unpaid. Or at best, paid at a rate of a few pence in the £. If that is correct, then it would explain, (and in my view, justify), the actions of the Alan Higgs Centre charity.
It's very unfortunate that this has impacted on the Academy. I think these kind of situations were bound to arise, once SISU/Arvo placed CCFC Ltd., (which I am assuming is the part of the company that owns the FL golden share), into administration.
Best business practice suggests that these kind of issues should be anticipated in advance and then managed in order to minimise their impact. I've yet to see signs of this happening following the administration of CCFC Ltd. Even if this is taking place 'behind the scenes', it doesn't appear to be working.